GitHub link for manuscript: “Opportunistic pathogens are prevalent across the culturable exogenous and endogenous microbiota of stable flies captured at a dairy facility.”In this study, bacteria were cultured from internal homogenates and external surfaces of Stomoxys flies captured from a dairy farm in Wisconsin. Sample pool information is as follows:D01A to D08A: Internal homogenate of flies caught near free-stall barn in JulyD09A to D16A: Internal homogenate of flies caught near free-stall barn in August/SeptemberT01A to T08A: External homogenate of flies caught near free-stall barn in JulyT09A to T16A: External homogenate of flies caught near free-stall barn in August/SeptemberD01C to D04C: Internal homogenate of flies caught near calf-hutches in JulyD05C to D07C: Internal homogenate of flies caught near calf-hutches in August/SeptemberT01C to T04C: External homogenate of flies caught near calf-hutches in JulyT05C to T07C: External homogenate of flies caught near calf-hutches in August/SeptemberFiles in this repository:ArlingtonPathogenIncidence_DataSummary.xlsx -> Excel file containing a summary of all bacterial isolates cultured from stable flies. The “Strains” tab provides information on the sample type, isolation media, partial 16S rRNA sequence, and taxonomic information. Remaining sheets provide a summary of incidence rates in different sample types for key bacterial taxa.FisherTests -> R Script for fisher testsTable_RImport.xlsx -> Required input file showing the counts of key taxa in different sample types for R Script. The “total” column represents the number of fly pools for each sample type
GitHub Repository for: Opportunistic pathogens are prevalent across the culturable exogenous and endogenous microbiota of stable flies captured at a dairy facility
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